F. Bretz1 , J. Landgrebe2 , E. Brunner3
1 B&SR, Novartis Pharma AG, Basel, Switzerland 2 Abteilung Biochemie II, Universität Göttingen, Göttingen, Germany 3 Abteilung Medizinische Statistik, Universität Göttingen, Göttingen, Germany
Objectives: Discussion of different error concepts relevant to microarray experiments. Review of some commonly used multiple testing procedures. Comparison of different approaches as applied to gene expression data. Methods: This article focuses on familywise error rate (FWER) and false discovery rate (FDR) controlling procedures. Methods under investigation include: Bonferroni-type methods and their improvements (including resampling approaches), modified Bonferroni methods, data-driven approaches, as well as the linear step-up method and its modifications. Particular emphasis lies on the description of the assumptions, advantages and limitations for the investigated methods. Results: FWER controlling procedures are often too conservative in high dimensional screening studies. A better balance between the raw P -values and the stringent FWER-adjusted P -values may be required in many situations, as provided by FDR controlling and related procedures. Conclusions: The questions remain open, which error concept to apply and which multiple testing procedure to use. Although we believe that the FDR or one of its variants will be applied more often in the future, longterm experience with microarray technology is missing and thus the validity of appropriate multiple test procedures cannot yet be assessed for microarray data analysis.
Screening, Familywise error rate, false discovery rate, error concepts
Manuel Monreal1, Luis Peidro2, Carlos Resines3, Carlos Garcés4, José Luís Fernández5, Eduardo Garagorri6, Juan Carlos González7, for the NETCOT Investigators*
Thromb Haemost 2008 99 6: 1112-1115
M. Dietlein1, H. Wieler2, M. Schmidt1, R. Schwab3, P. E. Goretzki4, H. Schicha1
Nuklearmedizin 2008 47 2: 65-72
Falk Thielemann, Jörg Ziegler, Klaus Peter Günther
Kinder- und Jugendmedizin 2007 7 7: 371-378
Methods of Information in Medicine provides a forum for interdisciplinary research research that...
Peter L. Elkin, Steven H. Brown, and Graham Wright submitted the paper "Biomedical...
Invitation to Apply for the Student Editorial Board 2014/2015 - The Journal Methods of Information...
The submission deadline for the Focus Theme on "Health Record Banking" has been...